NAME
fslview - viewer for 3d and 4d MRI data and DTI images
SYNOPSIS
fslview [-m <viewmode>] [<baseimage> [imageoptions] ... ]
DESCRIPTION
FSLView is an interactive display tool for 3D, 4D and DTI data. FSLView
can read Analyze and NIFTI files, either uncompressed or compressed,
and either as a single file (e.g. image.nii.gz) or two files (e.g.
image.hdr & image.img). FSLView supports multiple image overlays with
indivdual color maps.
There are four different image viewing modes:
Ortho - the default view showing axial, orthogonal and sagittal
slices.
Lightbox - shows all axial slices simultaneously.
Single - shows only a single slice - the orientation can be
switched between axial, orthogonal and sagittal and you can also
turn on auto-scrolling through the slices.
3d - renders the volume in 3d with optional clipping of brain
parts and overlays of metrical data.
In addition to viewing images FSLView can be used to create image masks
and manually edit images.
OPTIONS
-V, --verbose
Switch on diagnostic messages.
-h, --help
Display a short usage description.
-m, --mode 3d|ortho|lightbox
Initial viewer mode (see above mode descriptions).
PER-IMAGE OPTIONS
-l, --lut <name>
Color lookup table name. The full list is available via the
FSLView GUI (e.g. on of: Greyscale, Red-Yellow, Blue-Lightblue,
Red, Green, Blue, Yellow, Pink, Hot, Cool, Copper, ...)
-b, --bricon <min>,<max>
Initial bricon range, e.g., "2.3,6"
-t, --trans <value>
Initial transparency, e.g., 0.2
BUGREPORTS
If you discover an bugs please report them either to the FSL mailing
list or to fslview-bugs@fmrib.ox.ac.uk.
AUTHOR
FSLView was written by Dave Flitney, James Saunders, Mark Jenkinson,
Steve Smith and V Rama Aravind.
This manual page was written by Michael Hanke
<michael.hanke@gmail.com>, for the Debian project (but may be used by
others).
NOTES
FSLView is able to use brain atlas data to identify locations in brain
volumes. However, the brain atlases that come with FSL are licensed
under a non-free (non-commercial) license. Therefore they cannot be
included in the FSLView package, which only contains free software.
Please see /usr/share/doc/fslview/README.Debian for more information.
SEE ALSO
atlasquery(1), fsl(1)
FSLView Homepage: http://www.fmrib.ox.ac.uk/fsl/fslview/index.html
FSL Homepage: http://www.fmrib.ox.ac.uk/fsl/